Volume 601, Issue 3 p. 483-515
Research Article
Open Data

Mechanisms underlying divergent relationships between Ca2+ and YAP/TAZ signalling

A. Khalilimeybodi

A. Khalilimeybodi

Department of Mechanical and Aerospace Engineering, Jacobs School of Engineering, University of California San Diego, La Jolla, California, USA

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S.I. Fraley

Corresponding Author

S.I. Fraley

Department of Bioengineering, Jacobs School of Engineering, University of California San Diego, La Jolla, California, USA

Corresponding authors S. I. Fraley and P. Rangamani, Jacobs School of Engineering, University of California San Diego, La Jolla, California, USA.  Emails: [email protected] and [email protected]

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P. Rangamani

P. Rangamani

Department of Mechanical and Aerospace Engineering, Jacobs School of Engineering, University of California San Diego, La Jolla, California, USA

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First published: 04 December 2022
Citations: 1

Handling Editors: Natalia Trayanova & Eleonora Grandi

The peer review history is available in the Supporting information section of this article (https://doi.org/10.1113/JP283966#support-information-section).

This article was first published as a preprint. Khalilimeybodi A, Fraley SI, Rangamani P. 2022. Mechanisms underlying divergent relationships between Ca2+ and YAP/TAZ signaling. bioRxiv. https://doi.org/10.1101/2022.10.06.511161

Abstract

Yes-associated protein (YAP) and its homologue TAZ are transducers of several biochemical and biomechanical signals, integrating multiplexed inputs from the microenvironment into higher level cellular functions such as proliferation, differentiation and migration. Emerging evidence suggests that Ca2+ is a key second messenger that connects microenvironmental input signals and YAP/TAZ regulation. However, studies that directly modulate Ca2+ have reported contradictory YAP/TAZ responses: in some studies, a reduction in Ca2+ influx increases the activity of YAP/TAZ, while in others, an increase in Ca2+ influx activates YAP/TAZ. Importantly, Ca2+ and YAP/TAZ exhibit distinct spatiotemporal dynamics, making it difficult to unravel their connections from a purely experimental approach. In this study, we developed a network model of Ca2+-mediated YAP/TAZ signalling to investigate how temporal dynamics and crosstalk of signalling pathways interacting with Ca2+ can alter the YAP/TAZ response, as observed in experiments. By including six signalling modules (e.g. GPCR, IP3-Ca2+, kinases, RhoA, F-actin and Hippo-YAP/TAZ) that interact with Ca2+, we investigated both transient and steady-state cell response to angiotensin II and thapsigargin stimuli. The model predicts that stimuli, Ca2+ transients and frequency-dependent relationships between Ca2+ and YAP/TAZ are primarily mediated by cPKC, DAG, CaMKII and F-actin. Simulation results illustrate the role of Ca2+ dynamics and CaMKII bistable response in switching the direction of changes in Ca2+-induced YAP/TAZ activity. A frequency-dependent YAP/TAZ response revealed the competition between upstream regulators of LATS1/2, leading to the YAP/TAZ non-monotonic response to periodic GPCR stimulation. This study provides new insights into underlying mechanisms responsible for the controversial Ca2+–YAP/TAZ relationship observed in experiments.

Key points

  • YAP/TAZ integrates biochemical and biomechanical inputs to regulate cellular functions, and Ca2+ acts as a key second messenger linking cellular inputs to YAP/TAZ.
  • Studies have reported contradictory Ca2+–YAP/TAZ relationships for different cell types and stimuli.
  • A network model of Ca2+-mediated YAP/TAZ signalling was developed to investigate the underlying mechanisms of divergent Ca2+–YAP/TAZ relationships.
  • The model predicts context-dependent Ca2+ transient, CaMKII bistable response and frequency-dependent activation of LATS1/2 upstream regulators as mechanisms governing the Ca2+–YAP/TAZ relationship.
  • This study provides new insights into the underlying mechanisms of the controversial Ca2+–YAP/TAZ relationship to better understand the dynamics of cellular functions controlled by YAP/TAZ activity.

Open research badges

Open Data

This article has earned an Open Data badge for making publicly available the digitally-shareable data necessary to reproduce the reported results. The data is available at https://github.com/mkm1712/Calcium_YAP-TAZ.

Data availability statement

All data generated or analysed during this study are included in this published article (and its supplementary information files). The model's MATLAB code, including model species, parameters, reaction rates and systems of ODEs, is available at https://github.com/mkm1712/Calcium_YAP-TAZ.